fit trophic SDM

Function to fit a trophic SDM and functions to display output

trophicSDM()

Fitting a trophic Species distribution model

print(<trophicSDMfit>)

Prints a fitted trophicSDM model

summary(<trophicSDMfit>)

Summary of a fitted trophicSDM model

analyse a trophic SDM

Functions to get model parameters, visualise and analyse them

coef(<trophicSDMfit>)

Gets regression coefficients from a fitted trophicSDM model.

plot(<trophicSDMfit>)

Plots the regression coefficients of a fitted trophicSDM model

plotG()

Plots the metaweb G

plotG_inferred()

Plot the metaweb G according to the inferred coefficients

computeVariableImportance()

Computes variable importance of (groups of) variables of fitted a trophicSDM model.

Predict and evaluate a trophic SDM

Functions to predict with a trophic SDM and evaluate model predictions and goodness-of-fit

predict(<trophicSDMfit>)

Computes predicted values from the fitted trophicSDMfit model

trophicSDM_CV()

Compute K-fold cross-validation predicted values from a fitted trophicSDM model

evaluateModelFit()

Evaluates prediction goodness of fit

predictPotential()

Predicts species potential niche

loo(<trophicSDMfit>)

Computes an approximation of loo for the whole model

Functions to analyse and manipulate local models (i.e. single-species SDMs)

Set of functionsto analyse, manipulate and predict with local models (i.e. single-species SDMs)

SDMfit()

Fitting a single-species SDM

predict(<SDMfit>)

Predicts with a local model

coef(<SDMfit>)

Gets regression coefficients from a local model, i.e. a SDMfit object.

plot(<SDMfit>)

Plots the regression coefficients of a local model

print(<SDMfit>)

Prints a SDMfit object

summary(<SDMfit>)

Summary of a fitted SDMfit model

Data sets

Y

Simulated species distribution Y

X

Simulated environmental covariates X

G

Simulated environemntal covariates G

Tool functions

global

Global

buildFormula()

Builds SDM formulae

webSDM webSDM-package

webSDM: Including Known Interactions in Species Distribution Models